The document summarizes Dr. Larry Smarr's keynote presentation on enabling a high-performance national research platform. It describes how multi-institutional research increasingly relies on access to large datasets, requiring new cyberinfrastructure. The Pacific Research Platform provides high-bandwidth networking between universities to support research collaborations across disciplines. The next steps involve scaling this model into a national and global platform. The presentation highlights how the PRP enables various scientific applications and drives innovation through improved data transfer capabilities and distributed computing resources.
The Pacific Research Platform: a Science-Driven Big-Data Freeway System
The Pacific Research Platform (PRP) is a multi-institutional partnership that establishes a high-capacity "big data freeway system" spanning the University of California campuses and other research universities in California to facilitate rapid data access and sharing between researchers and institutions. Fifteen multi-campus application teams in fields like particle physics, astronomy, earth sciences, biomedicine, and visualization drive the technical design of the PRP over five years. The goal of the PRP is to extend campus "Science DMZ" networks to allow high-speed data movement between research labs, supercomputer centers, and data repositories across campus, regional
The Pacific Research Platform (PRP) is a multi-institutional cyberinfrastructure project that connects researchers across California and beyond to share large datasets. It spans the 10 University of California campuses, major private research universities, supercomputer centers, and some out-of-state universities. Fifteen multi-campus research teams in fields like physics, astronomy, earth sciences, biomedicine, and multimedia will drive the technical needs of the PRP over five years. The goal is to create a "big data freeway" to allow high-speed sharing of data between research labs, supercomputers, and repositories across multiple networks without performance loss over long distances.
The document provides an overview of the Pacific Research Platform (PRP) and discusses its role in connecting researchers across institutions and enabling new applications. It summarizes the PRP's key components like Science DMZs, Data Transfer Nodes (FIONAs), and use of Kubernetes for container management. Several examples are given of how the PRP facilitates high-performance distributed data analysis, access to remote supercomputers, and sensor networks coupled to real-time computing. Upcoming work on machine learning applications and expanding the PRP internationally is also outlined.
The Pacific Research Platform (PRP) is a high-bandwidth global private "cloud" connected to commercial clouds that provides researchers with distributed computing resources. It links Science DMZs at universities across California and beyond using a high-performance network. The PRP utilizes Data Transfer Nodes called FIONAs to transfer data at near full network speeds. It has adopted Kubernetes to orchestrate software containers across its resources. The PRP provides petabytes of distributed storage and hundreds of GPUs for machine learning. It allows researchers to perform data-intensive science across multiple universities much faster than possible individually.
The Pacific Research Platform:a Science-Driven Big-Data Freeway System
The Pacific Research Platform will create a regional "Big Data Freeway System" along the West Coast to support science. It will connect major research institutions with high-speed optical networks, allowing them to share vast amounts of data and computational resources. This will enable new forms of collaborative, data-intensive research for fields like particle physics, astronomy, biomedicine, and earth sciences. The first phase aims to establish a basic networked infrastructure, with later phases advancing capabilities to 100Gbps and beyond with security and distributed technologies.
Looking Back, Looking Forward NSF CI Funding 1985-2025
This document provides an overview of the development of national research platforms (NRPs) from 1985 to the present, with a focus on the Pacific Research Platform (PRP). It describes the evolution of the PRP from early NSF-funded supercomputing centers to today's distributed cyberinfrastructure utilizing optical networking, containers, Kubernetes, and distributed storage. The PRP now connects over 15 universities across the US and internationally to enable data-intensive science and machine learning applications across multiple domains. Going forward, the document discusses plans to further integrate regional networks and partner with new NSF-funded initiatives to develop the next generation of NRPs through 2025.
Using the Pacific Research Platform for Earth Sciences Big Data
Grand Challenge Lecture
Big Data and the Earth Sciences: Grand Challenges Workshop
Calit2’s Qualcomm Institute
University of California, San Diego
May 31, 2017
The document discusses the vision and progress of the Pacific Research Platform (PRP) in creating a "big data freeway" across the West Coast to enable data-intensive science. It outlines how the PRP builds on previous NSF and DOE networking investments to provide dedicated high-performance computing resources, like GPU clusters and Jupyter hubs, connected by high-speed networks at multiple universities. Several science driver teams are highlighted, including particle physics, astronomy, microbiology, earth sciences, and visualization, that will leverage PRP resources for large-scale collaborative data analysis projects.
The Pacific Research Platform: Building a Distributed Big-Data Machine-Learni...
The document summarizes the Pacific Research Platform (PRP) which connects researchers across multiple universities with high-speed networks and computing resources for big data and machine learning applications. Key points:
- PRP connects 15 universities with optical networks, distributed storage devices (FIONAs), and over 350 GPUs for data analysis and AI training.
- It allows researchers to rapidly share and analyze large datasets, with one example reducing a workflow from 19 days to 52 minutes.
- Other projects using PRP resources include climate modeling, astrophysics simulations, and machine learning courses involving thousands of students.
The Pacific Research Platform (PRP) aims to create a "Big Data freeway system" across research institutions in the western United States and Pacific region by leveraging high-bandwidth optical fiber networks. The PRP connects multiple universities and national laboratories, providing bandwidth up to 100Gbps for data-intensive science applications. Initial testing of the PRP demonstrated disk-to-disk transfer speeds exceeding 5Gbps between many sites. The PRP will be expanded with SDN/SDX capabilities to enable even higher performance for large-scale datasets from fields like astronomy, genomics, and particle physics.
A National Big Data Cyberinfrastructure Supporting Computational Biomedical R...
Invited Presentation
Symposium on Computational Biology and Bioinformatics:
Remembering John Wooley
National Institutes of Health
Bethesda, MD
July 29, 2016
National Federated Compute Platforms: The Pacific Research Platform
The Pacific Research Platform (PRP) is a multi-institution hypercluster that connects science DMZs across 25 partner campuses using FIONA data transfer nodes and 10-100Gbps networks. PRP adopted Kubernetes and Rook to orchestrate petabytes of distributed storage and GPUs for data science applications. A CHASE-CI grant added machine learning capabilities. PRP is working to federate with the Open Science Grid and become a prototype for a future National Research Platform connecting regional networks.
The Pacific Research Platform: A Regional-Scale Big Data Analytics Cyberinfra...
National Ocean Exploration Forum 2017
Ocean Exploration in a Sea of Data
Calit2’s Qualcomm Institute
University of California, San Diego
October 21, 2017
High Performance Cyberinfrastructure for Data-Intensive Research
This document summarizes a lecture given by Dr. Larry Smarr on high performance cyberinfrastructure for data-intensive research. The summary discusses:
1) The need for dedicated high-bandwidth networks separate from the shared internet to enable big data research due to the increasing volume of digital scientific data.
2) Extensions being made to networks like CENIC in California to provide campus "Big Data Freeways" connecting instruments, computing resources, and remote facilities.
3) The use of networks like HPWREN to provide high-performance wireless access for data-intensive applications in rural areas like astronomy, wildfire detection, and more.
A California-Wide Cyberinfrastructure for Data-Intensive Research
The document discusses creating a California-wide cyberinfrastructure for data-intensive research. It outlines efforts to connect all UC campuses and other research institutions across California with high-speed optical networks. This would create a "big data plane" to share large datasets. Several campuses have received NSF grants to upgrade their networks and implement Science DMZ architectures with 10-100Gbps connections to CENIC. Connecting these resources would provide researchers access to high-performance computing, large scientific instruments, and datasets. This would support collaborative big data science across disciplines like physics, climate modeling, genomics and microscopy.
CENIC: Pacific Wave and PRP Update Big News for Big Data
The document discusses the Pacific Wave exchange and Pacific Research Platform (PRP). It provides an overview of Pacific Wave, including its history and connectivity across the Pacific and western US. It then discusses how the PRP will build on infrastructure projects to create a high-speed "big data freeway" for science across California universities. This will allow researchers to more easily share and analyze large datasets for projects in areas like climate modeling, cancer genomics, astronomy and particle physics. Details are provided on specific science applications and datasets that will benefit from the enhanced connectivity of the PRP.
Creating a Big Data Machine Learning Platform in California
Big Data Tech Forum: Big Data Enabling Technologies and Applications
San Diego Chinese American Science and Engineering Association (SDCASEA)
Sanford Consortium
La Jolla, CA
December 2, 2017
2014.02.06
Calit2 Director Larry Smarr invited short talk to a workshop on "Enriching Human Life and Society," one of the planned themes for the UCSD Strategic Plan to be adopted in 2014.
Distributed Cyberinfrastructure to Support Big Data Machine Learning
Panel on the Future of Machine Learning
California Institute for Telecommunications and Information Technology
University of California, Irvine
May 24, 2018
The document discusses the Pacific Research Platform (PRP), a distributed cyberinfrastructure that connects researchers and data across multiple campuses in California and beyond using optical fiber networking. Key points:
- The PRP uses high-speed networking infrastructure like the CENIC network to connect data generators and consumers across 15+ campuses, creating an integrated "big data freeway system".
- It deploys specialized data transfer nodes called FIONAs to enable high-speed transfer of large datasets between sites at near the full network speed.
- Recent additions include using Kubernetes to orchestrate containers across the PRP infrastructure and integrating machine learning resources through the CHASE-CI grant to support data-intensive AI applications.
The Pacific Research Platform: Building a Distributed Big-Data Machine-Learni...Larry Smarr
The Pacific Research Platform (PRP) is a distributed big data and machine learning cyberinfrastructure connecting researchers across multiple UC campuses. It was established in 2015 with NSF funding and has since expanded to include other California universities and national/international partners. The PRP provides high-speed networks, storage, and computing resources like GPUs. It has enabled new data-intensive collaborations and significantly accelerated research workflows. The PRP also supports educational initiatives, providing computing resources for data science courses impacting thousands of students.
The Pacific Research Platform: a Science-Driven Big-Data Freeway SystemLarry Smarr
The Pacific Research Platform (PRP) is a multi-institutional partnership that establishes a high-capacity "big data freeway system" spanning the University of California campuses and other research universities in California to facilitate rapid data access and sharing between researchers and institutions. Fifteen multi-campus application teams in fields like particle physics, astronomy, earth sciences, biomedicine, and visualization drive the technical design of the PRP over five years. The goal of the PRP is to extend campus "Science DMZ" networks to allow high-speed data movement between research labs, supercomputer centers, and data repositories across campus, regional
The Pacific Research Platform (PRP) is a multi-institutional cyberinfrastructure project that connects researchers across California and beyond to share large datasets. It spans the 10 University of California campuses, major private research universities, supercomputer centers, and some out-of-state universities. Fifteen multi-campus research teams in fields like physics, astronomy, earth sciences, biomedicine, and multimedia will drive the technical needs of the PRP over five years. The goal is to create a "big data freeway" to allow high-speed sharing of data between research labs, supercomputers, and repositories across multiple networks without performance loss over long distances.
The document provides an overview of the Pacific Research Platform (PRP) and discusses its role in connecting researchers across institutions and enabling new applications. It summarizes the PRP's key components like Science DMZs, Data Transfer Nodes (FIONAs), and use of Kubernetes for container management. Several examples are given of how the PRP facilitates high-performance distributed data analysis, access to remote supercomputers, and sensor networks coupled to real-time computing. Upcoming work on machine learning applications and expanding the PRP internationally is also outlined.
Berkeley cloud computing meetup may 2020Larry Smarr
The Pacific Research Platform (PRP) is a high-bandwidth global private "cloud" connected to commercial clouds that provides researchers with distributed computing resources. It links Science DMZs at universities across California and beyond using a high-performance network. The PRP utilizes Data Transfer Nodes called FIONAs to transfer data at near full network speeds. It has adopted Kubernetes to orchestrate software containers across its resources. The PRP provides petabytes of distributed storage and hundreds of GPUs for machine learning. It allows researchers to perform data-intensive science across multiple universities much faster than possible individually.
The Pacific Research Platform:a Science-Driven Big-Data Freeway SystemLarry Smarr
The Pacific Research Platform will create a regional "Big Data Freeway System" along the West Coast to support science. It will connect major research institutions with high-speed optical networks, allowing them to share vast amounts of data and computational resources. This will enable new forms of collaborative, data-intensive research for fields like particle physics, astronomy, biomedicine, and earth sciences. The first phase aims to establish a basic networked infrastructure, with later phases advancing capabilities to 100Gbps and beyond with security and distributed technologies.
Looking Back, Looking Forward NSF CI Funding 1985-2025Larry Smarr
This document provides an overview of the development of national research platforms (NRPs) from 1985 to the present, with a focus on the Pacific Research Platform (PRP). It describes the evolution of the PRP from early NSF-funded supercomputing centers to today's distributed cyberinfrastructure utilizing optical networking, containers, Kubernetes, and distributed storage. The PRP now connects over 15 universities across the US and internationally to enable data-intensive science and machine learning applications across multiple domains. Going forward, the document discusses plans to further integrate regional networks and partner with new NSF-funded initiatives to develop the next generation of NRPs through 2025.
Using the Pacific Research Platform for Earth Sciences Big DataLarry Smarr
Grand Challenge Lecture
Big Data and the Earth Sciences: Grand Challenges Workshop
Calit2’s Qualcomm Institute
University of California, San Diego
May 31, 2017
Pacific Research Platform Science DriversLarry Smarr
The document discusses the vision and progress of the Pacific Research Platform (PRP) in creating a "big data freeway" across the West Coast to enable data-intensive science. It outlines how the PRP builds on previous NSF and DOE networking investments to provide dedicated high-performance computing resources, like GPU clusters and Jupyter hubs, connected by high-speed networks at multiple universities. Several science driver teams are highlighted, including particle physics, astronomy, microbiology, earth sciences, and visualization, that will leverage PRP resources for large-scale collaborative data analysis projects.
The Pacific Research Platform: Building a Distributed Big-Data Machine-Learni...Larry Smarr
The document summarizes the Pacific Research Platform (PRP) which connects researchers across multiple universities with high-speed networks and computing resources for big data and machine learning applications. Key points:
- PRP connects 15 universities with optical networks, distributed storage devices (FIONAs), and over 350 GPUs for data analysis and AI training.
- It allows researchers to rapidly share and analyze large datasets, with one example reducing a workflow from 19 days to 52 minutes.
- Other projects using PRP resources include climate modeling, astrophysics simulations, and machine learning courses involving thousands of students.
Pacific Wave and PRP Update Big News for Big DataLarry Smarr
The Pacific Research Platform (PRP) aims to create a "Big Data freeway system" across research institutions in the western United States and Pacific region by leveraging high-bandwidth optical fiber networks. The PRP connects multiple universities and national laboratories, providing bandwidth up to 100Gbps for data-intensive science applications. Initial testing of the PRP demonstrated disk-to-disk transfer speeds exceeding 5Gbps between many sites. The PRP will be expanded with SDN/SDX capabilities to enable even higher performance for large-scale datasets from fields like astronomy, genomics, and particle physics.
A National Big Data Cyberinfrastructure Supporting Computational Biomedical R...Larry Smarr
Invited Presentation
Symposium on Computational Biology and Bioinformatics:
Remembering John Wooley
National Institutes of Health
Bethesda, MD
July 29, 2016
National Federated Compute Platforms: The Pacific Research PlatformLarry Smarr
The Pacific Research Platform (PRP) is a multi-institution hypercluster that connects science DMZs across 25 partner campuses using FIONA data transfer nodes and 10-100Gbps networks. PRP adopted Kubernetes and Rook to orchestrate petabytes of distributed storage and GPUs for data science applications. A CHASE-CI grant added machine learning capabilities. PRP is working to federate with the Open Science Grid and become a prototype for a future National Research Platform connecting regional networks.
The Pacific Research Platform: A Regional-Scale Big Data Analytics Cyberinfra...Larry Smarr
National Ocean Exploration Forum 2017
Ocean Exploration in a Sea of Data
Calit2’s Qualcomm Institute
University of California, San Diego
October 21, 2017
High Performance Cyberinfrastructure for Data-Intensive ResearchLarry Smarr
This document summarizes a lecture given by Dr. Larry Smarr on high performance cyberinfrastructure for data-intensive research. The summary discusses:
1) The need for dedicated high-bandwidth networks separate from the shared internet to enable big data research due to the increasing volume of digital scientific data.
2) Extensions being made to networks like CENIC in California to provide campus "Big Data Freeways" connecting instruments, computing resources, and remote facilities.
3) The use of networks like HPWREN to provide high-performance wireless access for data-intensive applications in rural areas like astronomy, wildfire detection, and more.
A California-Wide Cyberinfrastructure for Data-Intensive ResearchLarry Smarr
The document discusses creating a California-wide cyberinfrastructure for data-intensive research. It outlines efforts to connect all UC campuses and other research institutions across California with high-speed optical networks. This would create a "big data plane" to share large datasets. Several campuses have received NSF grants to upgrade their networks and implement Science DMZ architectures with 10-100Gbps connections to CENIC. Connecting these resources would provide researchers access to high-performance computing, large scientific instruments, and datasets. This would support collaborative big data science across disciplines like physics, climate modeling, genomics and microscopy.
CENIC: Pacific Wave and PRP Update Big News for Big DataLarry Smarr
The document discusses the Pacific Wave exchange and Pacific Research Platform (PRP). It provides an overview of Pacific Wave, including its history and connectivity across the Pacific and western US. It then discusses how the PRP will build on infrastructure projects to create a high-speed "big data freeway" for science across California universities. This will allow researchers to more easily share and analyze large datasets for projects in areas like climate modeling, cancer genomics, astronomy and particle physics. Details are provided on specific science applications and datasets that will benefit from the enhanced connectivity of the PRP.
Creating a Big Data Machine Learning Platform in CaliforniaLarry Smarr
Big Data Tech Forum: Big Data Enabling Technologies and Applications
San Diego Chinese American Science and Engineering Association (SDCASEA)
Sanford Consortium
La Jolla, CA
December 2, 2017
2014.02.06
Calit2 Director Larry Smarr invited short talk to a workshop on "Enriching Human Life and Society," one of the planned themes for the UCSD Strategic Plan to be adopted in 2014.
Distributed Cyberinfrastructure to Support Big Data Machine LearningLarry Smarr
Panel on the Future of Machine Learning
California Institute for Telecommunications and Information Technology
University of California, Irvine
May 24, 2018
Distributed Cyberinfrastructure to Support Big Data Machine LearningLarry Smarr
Panel on the Future of Machine Learning
California Institute for Telecommunications and Information Technology
University of California, Irvine
May 24, 2018
The Rise of Supernetwork Data Intensive ComputingLarry Smarr
Invited Remote Lecture to SC21
The International Conference for High Performance Computing, Networking, Storage, and Analysis
St. Louis, Missouri
November 18, 2021
My Remembrances of Mike Norman Over The Last 45 YearsLarry Smarr
Mike Norman has been a leader in computational astrophysics for over 45 years. Some of his influential work includes:
- Cosmic jet simulations in the early 1980s which helped explain phenomena from galactic centers.
- Pioneering the use of adaptive mesh refinement in the 1990s to achieve dynamic load balancing on supercomputers.
- Massive cosmology simulations in the late 2000s with over 100 trillion particles using thousands of processors across multiple supercomputing sites, producing petabytes of data.
- Developing end-to-end workflows in the 2000s to couple supercomputers, high-speed networks, and large visualization systems to enable real-time analysis of extremely large astrophysics simulations.
Metagenics How Do I Quantify My Body and Try to Improve its Health? June 18 2019Larry Smarr
Larry Smarr discusses quantifying his body and health over time through extensive self-tracking. He measures various biomarkers through regular blood tests and analyzes his gut microbiome by sequencing stool samples. This revealed issues like chronic inflammation and an unhealthy microbiome. Smarr then took steps like a restricted eating window and increasing plant diversity in his diet, which reversed metabolic syndrome issues and correlated with shifts in his microbiome ecology. His goal is to continue precisely measuring factors like toxins, hormones, gut permeability and food/supplement impacts to further optimize his health.
Panel: Reaching More Minority Serving InstitutionsLarry Smarr
This document discusses engaging more minority serving institutions (MSIs) in cyberinfrastructure development through regional networks. It provides data showing the importance of MSIs like historically black colleges and universities (HBCUs) in educating underrepresented minority students in STEM fields. Regional networks can help equalize opportunities by assisting MSIs in overcoming barriers to resources through training, networking infrastructure support, and helping institutions obtain necessary staffing and funding. Strategies mentioned include collaborating with MSIs on grants and addressing issues identified in surveys like lack of vision for data use beyond compliance. The goal is to broaden participation in STEAM fields by leveraging the success MSIs have shown in supporting underrepresented students.
Global Network Advancement Group - Next Generation Network-Integrated SystemsLarry Smarr
This document summarizes a presentation on global petascale to exascale workflows for data intensive sciences. It discusses a partnership convened by the GNA-G Data Intensive Sciences Working Group with the mission of meeting challenges faced by data-intensive science programs. Cornerstone concepts that will be demonstrated include integrated network and site resource management, model-driven frameworks for resource orchestration, end-to-end monitoring with machine learning-optimized data transfers, and integrating Qualcomm's GradientGraph with network services to optimize applications and science workflows.
Wireless FasterData and Distributed Open Compute Opportunities and (some) Us...Larry Smarr
This document discusses opportunities for ESnet to support wireless edge computing through developing a strategy around self-guided field laboratories (SGFL). It outlines several potential science use cases that could benefit from wireless and distributed computing capabilities, both in the short term through technologies like 5G, LoRa and Starlink, and longer term through the vision of automated SGFL. The document proposes some initial ideas for deploying and testing wireless edge computing technologies through existing projects to help enable the SGFL vision and further scientific opportunities. It emphasizes that exploring these emerging areas could help drive new science possibilities if done at a reasonable scale.
The Asia Pacific and Korea Research Platforms: An Overview Jeonghoon MoonLarry Smarr
This document provides an overview of Asia Pacific and Korea research platforms. It discusses the Asia Pacific Research Platform working group in APAN, including its objectives to promote HPC ecosystems and engage members. It describes the Asi@Connect project which provides high-capacity internet connectivity for research across Asia-Pacific. It also discusses the Korea Research Platform and efforts to expand it to 25 national research institutes in Korea. New related projects on smart hospitals, agriculture, and environment are mentioned. The conclusion discusses enhancing APAN and the Korea Research Platform and expanding into new areas like disaster and AI education.
### Data Description and Analysis Summary for Presentation
#### 1. **Importing Libraries**
Libraries used:
- `pandas`, `numpy`: Data manipulation
- `matplotlib`, `seaborn`: Data visualization
- `scikit-learn`: Machine learning utilities
- `statsmodels`, `pmdarima`: Statistical modeling
- `keras`: Deep learning models
#### 2. **Loading and Exploring the Dataset**
**Dataset Overview:**
- **Source:** CSV file (`mumbai-monthly-rains.csv`)
- **Columns:**
- `Year`: The year of the recorded data.
- `Jan` to `Dec`: Monthly rainfall data.
- `Total`: Total annual rainfall.
**Initial Data Checks:**
- Displayed first few rows.
- Summary statistics (mean, standard deviation, min, max).
- Checked for missing values.
- Verified data types.
**Visualizations:**
- **Annual Rainfall Time Series:** Trends in annual rainfall over the years.
- **Monthly Rainfall Over Years:** Patterns and variations in monthly rainfall.
- **Yearly Total Rainfall Distribution:** Distribution and frequency of annual rainfall.
- **Box Plots for Monthly Data:** Spread and outliers in monthly rainfall.
- **Correlation Matrix of Monthly Rainfall:** Relationships between different months' rainfall.
#### 3. **Data Transformation**
**Steps:**
- Ensured 'Year' column is of integer type.
- Created a datetime index.
- Converted monthly data to a time series format.
- Created lag features to capture past values.
- Generated rolling statistics (mean, standard deviation) for different window sizes.
- Added seasonal indicators (dummy variables for months).
- Dropped rows with NaN values.
**Result:**
- Transformed dataset with additional features ready for time series analysis.
#### 4. **Data Splitting**
**Procedure:**
- Split the data into features (`X`) and target (`y`).
- Further split into training (80%) and testing (20%) sets without shuffling to preserve time series order.
**Result:**
- Training set: `(X_train, y_train)`
- Testing set: `(X_test, y_test)`
#### 5. **Automated Hyperparameter Tuning**
**Tool Used:** `pmdarima`
- Automatically selected the best parameters for the SARIMA model.
- Evaluated using metrics such as AIC and BIC.
**Output:**
- Best SARIMA model parameters and statistical summary.
#### 6. **SARIMA Model**
**Steps:**
- Fit the SARIMA model using the training data.
- Evaluated on both training and testing sets using MAE and RMSE.
**Output:**
- **Train MAE:** Indicates accuracy on training data.
- **Test MAE:** Indicates accuracy on unseen data.
- **Train RMSE:** Measures average error magnitude on training data.
- **Test RMSE:** Measures average error magnitude on testing data.
#### 7. **LSTM Model**
**Preparation:**
- Reshaped data for LSTM input.
- Converted data to `float32`.
**Model Building and Training:**
- Built an LSTM model with one LSTM layer and one Dense layer.
- Trained the model on the training data.
**Evaluation:**
- Evaluated on both training and testing sets using MAE and RMSE.
**Output:**
- **Train MAE:** Accuracy on training data.
- **T
Cómo hemos implementado semántica de "Exactly Once" en nuestra base de datos ...javier ramirez
Los sistemas distribuidos son difíciles. Los sistemas distribuidos de alto rendimiento, más. Latencias de red, mensajes sin confirmación de recibo, reinicios de servidores, fallos de hardware, bugs en el software, releases problemáticas, timeouts... hay un montón de motivos por los que es muy difícil saber si un mensaje que has enviado se ha recibido y procesado correctamente en destino. Así que para asegurar mandas el mensaje otra vez.. y otra... y cruzas los dedos para que el sistema del otro lado tenga tolerancia a los duplicados.
QuestDB es una base de datos open source diseñada para alto rendimiento. Nos queríamos asegurar de poder ofrecer garantías de "exactly once", deduplicando mensajes en tiempo de ingestión. En esta charla, te cuento cómo diseñamos e implementamos la palabra clave DEDUP en QuestDB, permitiendo deduplicar y además permitiendo Upserts en datos en tiempo real, añadiendo solo un 8% de tiempo de proceso, incluso en flujos con millones de inserciones por segundo.
Además, explicaré nuestra arquitectura de log de escrituras (WAL) paralelo y multithread. Por supuesto, todo esto te lo cuento con demos, para que veas cómo funciona en la práctica.
LLM powered contract compliance application which uses Advanced RAG method Self-RAG and Knowledge Graph together for the first time.
It provides highest accuracy for contract compliance recorded so far for Oil and Gas Industry.
Australian Catholic University degree offer diploma Transcript
Towards a High-Performance National Research Platform Enabling Digital Research
1. “Towards a High-Performance
National Research Platform
Enabling Digital Research”
Closing Keynote
CNI Spring 2018
San Diego, CA
April 13, 2018
Dr. Larry Smarr
Director, California Institute for Telecommunications and Information Technology
Harry E. Gruber Professor,
Dept. of Computer Science and Engineering
Jacobs School of Engineering, UCSD
http://lsmarr.calit2.net
1
2. Abstract
Research in data-intensive fields is increasingly multi-investigator and multi-institutional, depending on ever more rapid
access to ultra-large heterogeneous and widely distributed datasets, which in turn is demanding new technological
solutions in visualization, machine learning, and high-performance cyberinfrastructure. I will describe how my NSF-funded
Pacific Research Platform (PRP), which provides an Internet platform with 100-1000 times the bandwidth of today's
commodity Internet to all the research universities on the West Coast, is being designed from the application needs of
researchers. The disciplines which are engaged in partnering with the PRP range from particle physics to climate to
human health, as well as archaeology, digital libraries, and social media analysis. The next stage, well underway, is
understanding how to scale this prototype cyberinfrastructure to a National and Global Research Platform.
3. 30 Years Ago NSF Brought to University Researchers
a DOE HPC Center Model
NCSA Was Modeled on LLNL SDSC Was Modeled on MFEnet
1985/6
4. Thirty Years After NSF Adopts DOE Supercomputer Center Model
NSF Adopts DOE ESnet’s Science DMZ for High Performance Applications
• A Science DMZ integrates 4 key concepts into a unified whole:
– A network architecture designed for high-performance applications,
with the science network distinct from the general-purpose network
– The use of dedicated systems as data transfer nodes (DTNs)
– Performance measurement and network testing systems that are
regularly used to characterize and troubleshoot the network
– Security policies and enforcement mechanisms that are tailored for
high performance science environments
http://fasterdata.es.net/science-dmz/
Science DMZ
Coined 2010
The DOE ESnet Science DMZ and the NSF “Campus Bridging” Taskforce Report Formed the Basis
for the NSF Campus Cyberinfrastructure Network Infrastructure and Engineering (CC-NIE) Program
5. Based on Community Input and on ESnet’s Science DMZ Concept,
NSF Has Made Over 200 Campus-Level Awards in 44 States
Source: Kevin Thompson, NSF
6. Creating a “Big Data” Freeway on Campus:
NSF-Funded CC-NIE Grants Prism@UCSD and CHeruB
Prism@UCSD, Phil Papadopoulos, SDSC, Calit2, PI (2013-15)
CHERuB, Mike Norman, SDSC PI
CHERuB
7. How UCSD DMZ Network Transforms Big Data Microbiome Science:
Preparing for Knight/Smarr 1 Million Core-Hour Analysis
Knight Lab
FIONA
10Gbps
Gordon
Prism@UCSD
Data Oasis
7.5PB,
200GB/s
Knight 1024 Cluster
In SDSC Co-Lo
CHERuB
100Gbps
Emperor & Other Vis Tools
64Mpixel Data Analysis Wall
120Gbps
40Gbps
1.3Tbps
8. (GDC)
Logical Next Step: The Pacific Research Platform Networks Campus DMZs
to Create a Regional End-to-End Science-Driven “Big Data Superhighway” System
NSF CC*DNI Grant
$5M 10/2015-10/2020
PI: Larry Smarr, UC San Diego Calit2
Co-PIs:
• Camille Crittenden, UC Berkeley CITRIS,
• Tom DeFanti, UC San Diego Calit2/QI,
• Philip Papadopoulos, UCSD SDSC,
• Frank Wuerthwein, UCSD Physics and SDSC
Letters of Commitment from:
• 50 Researchers from 15 Campuses
• 32 IT/Network Organization Leaders
NSF Program Officer: Amy Walton
Source: John Hess, CENIC
9. California’s Research and Education Network (CENIC) Provides
A World-Class Network Driving Innovation, Collaboration, & Economic Growth
• Charter Associates:
– California K-12 System (~10,000)
– California Community Colleges (114)
– California State University System (23)
– Stanford, Caltech, USC
– University of California (10)
– California Public Libraries (1150)
– Naval Postgraduate School
10. • 8,000+ miles of optical fiber
• Members in all 58 counties connect via fiber-
optic cable or leased circuits from telecom
carriers
• Over 12,000 sites connect to CENIC
• A non-profit governed by it’s members
• Collaborates with over 750 private sector
partners and contributes > $100,000,000
to the CA Economy
• 20 years of connecting California
20,000,000 Californians use CENIC
11. Key Innovation: UCSD Designed FIONAs To Solve the Disk-to-Disk
Data Transfer Problem at Full Speed on 10/40/100G Networks
UCSD Designed FIONAs
To Solve the Disk-to-Disk
Data Transfer Problem
For Big Data
at Full Speed
on 10G, 40G and 100G Networks
FIONAS—10/40G, $8,000
Phil Papadopoulos, SDSC &
Tom DeFanti, Joe Keefe & John Graham, Calit2
John Graham, Calit2
FIONette—1G, $250
12. We Measure Disk-to-Disk Throughput with 10GB File Transfer
4 Times Per Day in Both Directions for All PRP Sites
January 29, 2016
From Start of Monitoring 12 DTNs
to 24 DTNs Connected at 10-40G
in 1 ½ Years
July 21, 2017
Source: John Graham, Calit2/QI
13. We Aggressively Use Kubernetes
to Manage Containers Across the PRP
“Kubernetes is a way of stitching together
a collection of machines into, basically, a big computer,”
--Craig Mcluckie, Google
and now CEO and Founder of Heptio
"Everything at Google runs in a container."
--Joe Beda,Google
“Kubernetes has emerged as
the container orchestration engine of choice
for many cloud providers including
Google, AWS, Rackspace, and Microsoft,
and is now being used in HPC and Science DMZs.
--John Graham, Calit2/QI UC San Diego
14. Rook is Ceph Cloud-Native Object Storage
‘Inside’ Kubernetes
https://rook.io/
15. FIONA8
FIONA8
100G Epyc NVMe
40G 160TB
100G NVMe 6.4T
SDSU
100G Gold NVMe
March 2018 John Graham, UCSD
100G NVMe 6.4T
Caltech
40G 160TB
UCAR
FIONA8
UCI
FIONA8
FIONA8
FIONA8
FIONA8
FIONA8
FIONA8
FIONA8
FIONA8
sdx-controller
controller-0
Calit2
100G Gold FIONA8
SDSC
40G 160TB
UCR 40G 160TB
USC
40G 160TB
UCLA
40G 160TB
Stanford
40G 160TB
UCSB
100G NVMe 6.4T
40G 160TB
UCSC
40G 160TB
Hawaii
Running Kubernetes/Rook/Ceph On PRP
Allows Us to Deploy a Distributed PB+ of Storage for Posting Science Data
Rook/Ceph - Block/Object/FS
Swift API compatible with
SDSC, AWS, and Rackspace
Kubernetes
Centos7
16. Increasing Participation Through
PRP Science Engagement Workshops
Source: Camille Crittenden, UC Berkeley
UC San Diego
UC Merced
UC Davis UC Berkeley
17. PRP’s First 2 Years:
Connecting Multi-Campus Application Teams and Devices
Earth
Sciences
18. Data Transfer Rates From 40 Gbps DTN in UCSD Physics Building,
Across Campus on PRISM DMZ, Then to Chicago’s Fermilab Over CENIC/ESnet
Source: Frank Wuerthwein, UCSD, SDSC
Based on This Success,
Will Upgrade 40G DTN to 100G
For Bandwidth Tests & Kubernetes
to OSG, Caltech, and UCSC
19. PRP Over CENIC
Couples UC Santa Cruz Astrophysics Cluster to LBNL NERSC Supercomputer
CENIC 2018
Innovations in
Networking
Award for
Research
Applications
20. 100 Gbps FIONA at UCSC Allows for Downloads to the UCSC Hyades Cluster
from the LBNL NERSC Supercomputer for DESI Science Analysis
300 images per night.
100MB per raw image
120GB per night
250 images per night.
530MB per raw image
800GB per night
Source: Peter Nugent, LBNL
Professor of Astronomy, UC Berkeley
Precursors to
LSST and NCSA
NSF-Funded Cyberengineer
Shaw Dong @UCSC
Receiving FIONA
Feb 7, 2017
21. Cancer Genomics Hub (UCSC) Was Housed in SDSC, But NIH Moved Dataset
From SDSC to Uchicago - So the PRP Deployed a FIONA to Chicago’s MREN
1G
8G
Data Source: David Haussler,
Brad Smith, UCSC
15G
Jan 2016
22. The Prototype PRP Has Attracted
New Application Drivers
Scott Sellars, Marty Ralph
Center for Western Weather
and Water Extremes
Frank Vernon, Graham Kent, & Ilkay Altintas, Wildfires
Jules Jaffe – Undersea Microscope
Tom Levy At-Risk Cultural Heritage
23. Jupyter Has Become the Digital Fabric for Data Sciences
PRP Creates UC-JupyterHub Backbone
Source: John Graham, Calit2
Goal: Jupyter Everywhere
24. PRP Links At-Risk Cultural Heritage and Archaeology Datasets
at UCB, UCLA, UCM and UCSD with CAVEkiosks
48 Megapixel CAVEkiosk
UCSD Library
48 Megapixel CAVEkiosk
UCB Library
24 Megapixel CAVEkiosk
UCM Library
UC President Napolitano's Research Catalyst Award to UC San Diego (Tom Levy),
UC Berkeley (Benjamin Porter), UC Merced (Nicola Lercari) and UCLA (Willeke Wendrich)
25. Church Fire, San Diego CA
Alert SD&ECameras/HPWREN
October 21, 2017
New PRP Application:
Coupling Wireless Wildfire Sensors to Computing
Thomas Fire, Ventura, CA
Firemap Tool, WIFIRE
December 10, 2017
CENIC 2018
Innovations in Networking Award
for Experimental Applications
26. CENIC/PRP Backbone Sets Stage for 2017 Wireless Expansion
of HPWREN into Orange and Possibly Riverside Counties
• CENIC/PRP Will Connect
UCSD and SDSU
– Data Redundancy
– Disaster Recovery
– High Availability
• CENIC Extension to UCI & UCR
– Data Replication Sites
UCR
UCI
UCSD
SDSU
Source: Frank Vernon,
Greg Hidley, UCSD
27. Once a Wildfire is Spotted, PRP Brings High-Resolution Weather Data
to Fire Modeling Workflows in WIFIRE
Real-Time
Meteorological Sensors
Weather Forecast
Landscape data
WIFIRE Firemap
Fire Perimeter
Work Flow
PRP
Source: Ilkay Altintas, SDSC
28. Director: F. Martin Ralph Website: cw3e.ucsd.edu
Big Data Collaboration with:
Source: Scott Sellers, CW3E
Collaboration on Atmospheric Water in the West
Between UC San Diego and UC Irvine
Director, Soroosh Sorooshian, UCSD Website http://chrs.web.uci.edu
29. Calit2’s FIONA
SDSC’s COMET
Calit2’s FIONA
Pacific Research Platform (10-100 Gb/s)
GPUsGPUs
Complete workflow time: 20 days20 hrs20 Minutes!
UC, Irvine UC, San Diego
Major Speedup in Scientific Work Flow
Using the PRP
Source: Scott Sellers, CW3E
30. Using Machine Learning to Determine
the Precipitation Object Starting Locations
*Sellars et al., 2017 (in prep)
31. UC San Diego Jaffe Lab (SIO) Scripps Plankton Camera
Off the SIO Pier with Fiber Optic Network
32. Over 300 Million Images So Far!
Requires Machine Learning for Automated Image Analysis and Classification
Phytoplankton: Diatoms
Zooplankton: Copepods
Zooplankton: Larvaceans
Source: Jules Jaffe, SIO
”We are using the FIONAs for image processing...
this includes doing Particle Tracking Velocimetry
that is very computationally intense.”-Jules Jaffe
33. New NSF CHASE-CI Grant Creates a Community Cyberinfrastructure:
Adding a Machine Learning Layer Built on Top of the Pacific Research Platform
Caltech
UCB
UCI UCR
UCSD
UCSC
Stanford
MSU
UCM
SDSU
NSF Grant for High Speed “Cloud” of 256 GPUs
For 30 ML Faculty & Their Students at 10 Campuses
for Training AI Algorithms on Big Data
NSF Program Officer: Mimi McClure
34. FIONA8: Adding GPUs to FIONAs
Supports Data Science Machine Learning
Multi-Tenant Containerized GPU JupyterHub
Running Kubernetes / CoreOS
Eight Nvidia GTX-1080 Ti GPUs
~$13K
32GB RAM, 3TB SSD, 40G & Dual 10G ports
Source: John Graham, Calit2
35. Brain-Inspired Processors
Are Accelerating the Non-von Neumann Architecture Era
“On the drawing board are collections of 64, 256, 1024, and 4096 chips.
‘It’s only limited by money, not imagination,’ Modha says.”
Source: Dr. Dharmendra Modha
IBM Chief Scientist for Brain-inspired Computing
August 8, 2014
36. Calit2’s Qualcomm Institute Has Established a Pattern Recognition Lab
For Machine Learning on GPUs and von Neumann and NvN Processors
Source: Dr. Dharmendra Modha
Founding Director, IBM Cognitive Computing Group
August 8, 2014
UCSD ECE Professor Ken Kreutz-Delgado Brings
the IBM TrueNorth Chip
to Start Calit2’s Qualcomm Institute
Pattern Recognition Laboratory
September 16, 2015
37. Our Pattern Recognition Lab is Exploring Mapping
Machine Learning Algorithm Families Onto Novel Architectures
Qualcomm
Institute
• Deep & Recurrent Neural Networks (DNN, RNN)
• Graph Theoretic
• Reinforcement Learning (RL)
• Clustering and other neighborhood-based
• Support Vector Machine (SVM)
• Sparse Signal Processing and Source Localization
• Dimensionality Reduction & Manifold Learning
• Latent Variable Analysis (PCA, ICA)
• Stochastic Sampling, Variational Approximation
• Decision Tree Learning
38. 48 GPUs for
OSG Applications
UCSD Adding >350 Game GPUs to Data Sciences Cyberinfrastructure -
Devoted to Data Analytics and Machine Learning
SunCAVE 70 GPUs
WAVE + Vroom 48 GPUs
88 GPUs
for Students
CHASE-CI Grant Provides
96 GPUs at UCSD
for Training AI Algorithms on Big Data
39. Next Step: Surrounding the PRP Machine Learning Platform
With Clouds of GPUs and Non-Von Neumann Processors
Microsoft Installs Altera FPGAs
into Bing Servers &
384 into TACC for Academic Access
CHASE-CI
64-TrueNorth
Cluster
64-bit GPUs
4352x NVIDIA Tesla V100 GPUs
40. PRP Hosted
The First National Research Platform Workshop on August 7-8, 2017
Co-Chairs:
Larry Smarr, Calit2
& Jim Bottum, Internet2
150 Attendees
Announced in I2 Closing Keynote:
Larry Smarr “Toward a National Big Data Superhighway”
on Wednesday, April 26, 2017
41. The Second National Research Platform Workshop
Bozeman, MT August 6-7, 2018
A follow-up FIONA workshop
will be held as a lead into
the 2nd NRP workshop in Bozeman,
starting August 2nd.
The program is being developed
by Jerry Sheehan, in coordination
with Richard Alo (JSU) and will focus on
networking engineers and faculty
interested in expanding
the breadth of the NRP network.
While the workshop will be open to
the community, there is a specific focus
on EPSCoR affiliated
and minority serving institutions.
Co-Chairs:
Larry Smarr, Calit2
Inder Monga, ESnet
Ana Hunsinger, Internet2
Local Host: Jerry Sheehan, MSU
42. Expanding to the Global Research Platform
Via CENIC/Pacific Wave, Internet2, and International Links
PRP
PRP’s Current
International
Partners
Korea Shows Distance is Not the Barrier
to Above 5Gb/s Disk-to-Disk Performance
Netherlands
Guam
Australia
Korea
Japan
Singapore
43. Many Open Research Questions for This
Tightly Coupled Distributed “Computer” for Big Data Analysis
How To:
• Enable Data Discovery, Annotation, Curation
• Provide Both Working Data Storage and Archiving
• Encourage Application Teams to Adopt It?
• Strengthen Cybersecurity
• Tightly Integrate Cloud Providers
• Scale Both Technically and Socially?
• Plus Many More…
44. Our Support:
• US National Science Foundation (NSF) awards
CNS 0821155, CNS-1338192, CNS-1456638, CNS-1730158,
ACI-1540112, & ACI-1541349
• University of California Office of the President CIO
• UCSD Chancellor’s Integrated Digital Infrastructure Program
• UCSD Next Generation Networking initiative
• Calit2 and Calit2 Qualcomm Institute
• CENIC, PacificWave and StarLight
• DOE ESnet