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(MySQL)-[:to]->(neo4j)
A DBA Perspective
Dave Stern
@davestern1
MySQL to Neo4j: A DBA Perspective - David Stern @ GraphConnect NY 2013
Dev Ops @ FiftyThree
MySQL user & admin since 1998
Multiple tiers of masters & slaves
Bare metal & AWS - EC2/RDS
MySQL & Percona
neo4j user & admin since 2012
neo4j 1.8, 1.9
AWS: Multiple 3-instance enterprise clusters
How do you use MySQL?
Single Instance
Master/Slave, Multi-master
MySQL Cluster
Have you tried neo4j yet?

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Where does FiftyThree use
neo4j?
MySQL to Neo4j: A DBA Perspective - David Stern @ GraphConnect NY 2013
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Where does FiftyThree use
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Much more in development...

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What is this talk about?
Comparison
Configuration
Use
Comparison
Logical Partitioning
MySQL
Strictly enforced schema

neo4j
No logical databases
No tables
...no schema
...no joins
2.0: schema-optional

http://www.mysql.com/products/workbench/
Physical Partitioning & Sharding
Improves write performance, usually disk I/O

MySQL

neo4j

ind_ieprtbe
nobfl_e_al

No logical partitioning by DB or table

Databases on separate partitions or devices

Highly connected data: no clear separation

Shard horizontally (e.g. by time range)

Logs can be on separate partitions for I/O

Shard vertically (e.g. by table or function)
Logs can be on separate partitions for I/O
gain

gain

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SCALE UP!
Authentication & Authorization
MySQL
msl slc Hs,d,ue,slc_rv isr_rv udt_rv dlt_rvfo d;
yq> eet ot b sr eetpi, netpi, paepi, eeepi rm b
+-----+----+-----+------+------+------+------+
--------------------------------------------|Hs
ot
|d
b
|ue
sr
|slc_rv|isr_rv|udt_rv|dlt_rv|
eetpi
netpi
paepi
eeepi
+-----+----+-----+------+------+------+------+
--------------------------------------------|%
|ts
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et_
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+-----+----+-----+------+------+------+------+
---------------------------------------------
Authentication & Authorization
neo4j
No permissions
No users

How do you secure the DB?
1. Protect the database in a Private Network or VPC
2. Firewall: router, AWS Security Groups, iptables
3. Proxy requests via web server or Load Balancer
If you must allow access, use HTTPS & authenticate at the proxy.
MySQL to Neo4j: A DBA Perspective - David Stern @ GraphConnect NY 2013

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MySQL to Neo4j: A DBA Perspective - David Stern @ GraphConnect NY 2013
Replication

http://www.mysqlperformanceblog.com/wp-content/uploads/2013/07/23.png
Replication
SO SAE
TP LV;
STGOA slsaesi_one =1
E LBL q_lv_kpcutr
;
SATSAE
TR LV;
Replication vs. HA

MySQL
Free
Slaves pull updates
Eventual consistency
One-way, asynchronous

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Enterprise edition: can cost $
depending on use
Slaves can pull asynchronous
updates
Eventual consistency, optimistic
pushes to slaves are the default
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JVM
Buffers & Memory management =~ JVM settings
The database itself is extendable via Java

... if you're into that sort of thing
Built-in Tools
Data Browser
MySQL to Neo4j: A DBA Perspective - David Stern @ GraphConnect NY 2013
Built-in Tools
Data Browser
Backup Script
neo4j
$/p/e4/i/e4-akp-rmsnl:/06.8.7:32
otnojbnnojbcu fo ige/1.6121766
>-o/ei/e4-akppouto/031-20:01Z
t mdanojbcu/rdcin21-10T54:0
Promn fl bcu fo 'ige/1.6121766'
efrig ul akp rm snl:/06.8.7:32
...............
...............
.......
.......
[4Flscpe]
4 ie oid
Fl cnitnycek
ul ossec hc
.......... 1%
.......... 0
.......... 2%
.......... 0
.......... 3%
.......... 0
.......... 4%
.......... 0
.......... 5%
.......... 0
.......... 6%
.......... 0
.......... 7%
.......... 0
.......... 8%
.......... 0
.......... 9%
.......... 0
.......... 10
.......... 0%
Dn
oe

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Built-in Tools
Data Browser
Backup Script
MySQL
$inbcue -ue=BSR-pswr=BSRAS/aht/AKPDR
noakpx -srDUE -asodDUEPS pt/oBCU-I/
inbcue:Bcu cetdi drcoy'pt/oBCU-I/030-50-00'
noakpx akp rae n ietr /aht/AKPDR21-32_00-9
inbcue:MSLbno psto:flnm 'yq-i.003,
noakpx yQ ilg oiin ieae mslbn000'
psto 14112 0:05
oiin 96125 00:3
inbcue:cmltdO!
noakpx opee K
Built-in Tools
Data Browser
Backup Script
Visual Server Info
MySQL to Neo4j: A DBA Perspective - David Stern @ GraphConnect NY 2013
Configuration
MySQL
So many options...
msl SO VRALS
yq> HW AIBE;
+--------------------+-------------+
----------------------------------|Vral_ae
aibenm
|Vle
au
|
+--------------------+-------------+
----------------------------------|at_nrmn_nrmn
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.

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MySQL Configuration
Buffers, Caching & I/O
You can optimize dozens of settings like these...
ind_ufrpo_ie=1G
nobbfe_olsz
2
ind_ufrpo_ntne =8
nobbfe_olisacs
ind_diinlmmpo_ie=26
nobadtoa_e_olsz
5M
ind_ls_o_ttxcmi =2
nobfuhlga_r_omt
ind_ls_ehd=ODRC
nobfuhmto
_IET
ind_o_iesz =18
noblgfl_ie
2M
ind_o_ufrsz =6M
noblgbfe_ie
4
ind_ieprtbe
nobfl_e_al
ind_ocpct
nobi_aaiy
=50
0
ind_edi_hed =6
nobra_otras
4
ind_rt_otras=6
nobwiei_hed
4
MySQL Configuration
Network & Concurrency
and these...
tbecce
al_ah
mxcnetos
a_oncin

=24
08
=10
00

mxalwdpce
a_loe_akt

=1M
6
MySQL Configuration
Replication
and these...
sre-d=2
evri
mse-ot=d-atrmcmaycm
atrhs
bmse.yopn.o
mse-ot=30
atrpr
36
mse-sr=uenm
atrue
srae
mse-asod=pswr
atrpswr
asod
mse-onc-er =6
atrcnetrty
0
MySQL Configuration
Other
And these, depending on version & hardware...
sr_ufrsz
otbfe_ie
tptbesz
m_al_ie

=2
M
=3M
2

ji_ufrsz
onbfe_ie

=18
2k

qeyccetp
ur_ah_ye
qeyccesz
ur_ah_ie

=1
=6M
4

oe_ie_ii
pnflslmt

=89
12

..
..

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neo4j Configuration Tuning
Simple Questions
How many nodes do you expect?
How many relationships do you expect?
Average number of properties per node and relationship?
Optional: How do you expect to traverse the graph?
Long paths and/or large result sets?
Short paths and/or small results sets?

3 things to calculate:
File Cache Mapped Memory & Object Caches
Heap Size
RAM for OS
neo4j Configuration
Store file

Record size

Contents

neostore.nodestore.db

9B

Nodes

neostore.relationshipstore.db

3 B
3

Relationships

neostore.propertystore.db

4 B
1

Properties for nodes and
relationships

neostore.propertystore.db.strings 1 8 B
2

Values of string properties

neostore.propertystore.db.arrays 1 8 B
2

Values of array properties

Capacity Planning Estimates:
Node size (9B) x expected nodes (14 B in 2.0)
Relaltionship size (33B) x expected relationships
Property size (41B) x expected properties
Strings & Arrays
Configuration
Main config files
neo4j-wrapper.conf
neo4j.properties
neo4j-server.properties
Configuration
neo4j-wrapper.conf
Heap Size
GC method

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Object Caches
Indexes
HA
Backup
Configuration
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HTTP/S
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REST
Database mode
Logging
Configuration
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neo4j-wrapper.conf
#IiilJv Ha Sz (nM)
nta aa ep ie i B
waprjv.nteoy12
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#MxmmJv Ha Sz (nM)
aiu aa ep ie i B
waprjv.ammr=04
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Romain CAMPOURCY – Architecte Solution, Sopra Steria Patrick MEYER – Architecte IA Groupe, Sopra Steria La Génération de Récupération Augmentée (RAG) permet la réponse à des questions d’utilisateur sur un domaine métier à l’aide de grands modèles de langage. Cette technique fonctionne correctement lorsque la documentation est simple mais trouve des limitations dès que les sources sont complexes. Au travers d’un projet que nous avons réalisé, nous vous présenterons l’approche GraphRAG, une nouvelle approche qui utilise une base Neo4j générée pour améliorer la compréhension des documents et la synthèse d’informations. Cette méthode surpasse l’approche RAG en fournissant des réponses plus holistiques et précises.

graph databasegraphragneo4j
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graph databaseneo4j
neo4j: Buffers, Caching & I/O
neo4j.properties
Two types of caches: file buffer and object cache
File Buffer Cache:
#Dfutvle frtelwlvlgahegn
eal aus o h o-ee rp nie
notr.oetr.bmpe_eoy2M
esoendsoed.apdmmr=5
notr.eainhptr.bmpe_eoy5M
esoerltosisoed.apdmmr=0
notr.rprytr.bmpe_eoy9M
esoepoetsoed.apdmmr=0
notr.rprytr.bsrnsmpe_eoy10
esoepoetsoed.tig.apdmmr=3M
notr.rprytr.bary.apdmmr=3M
esoepoetsoed.rasmpe_eoy10

Object Cache:
nd_ah_ie26
oeccesz=5M
rltosi_ah_ie26
eainhpccesz=5M
#otoa
pinl
nd_ah_ra_rcin5
oeccearyfato=
rltosi_ah_ra_rcin5
eainhpccearyfato=
#TeG rssatccedsrbdblwi ol aalbei te
h C eitn ah ecie eo s ny vial n h
#NojEtrrs Eiin
e4 nepie dto.
#ccetp vle:sf (eal) wa,srn
ah_ye aus ot dfut, ek tog
ccetp=c
ah_yegr
neo4j: Concurrency
neo4j.properties
#cnurn HT rqet ta tesre wl srie
ocret TP euss ht h evr il evc.
ognojsre.esre.atras6
r.e4.evrwbevrmxhed=4
neo4j: HA
neo4j-server.properties
ognojsre.aaaemd=A
r.e4.evrdtbs.oeH

neo4j.properties
h.evri=
asre_d1
h.nta_ot=evr:01sre250
aiiilhsssre150,evr:01
#adsoeyulht:/xml.o/it
h.icvr.r=tp/eapecmls
#ot&pr t bn tecutrmngmn cmuiain
Hs
ot o id h lse aaeet omncto.
h.lse_evrsre150
acutrsre=evr:01
#otaeadpr t bn teH sre.
Hsnm n ot o id h A evr
h.evrm-oancm60
asre=ydmi.o:01
###Otoa cutrsrtge ###
## pinl lse taeis ##
#Itra o pligudtsfo mse.
nevl f uln pae rm atr
h.ulitra=0
apl_nevl1s
#h aon o sae temse wl akt rpiaeacmitd
Te mut f lvs h atr il s o elct
omte
#rnato.
tascin
h.xps_atr1
at_uhfco=
#uhsrtg o atascint asaedrn cmi.
Ps taey f
rnato o
lv uig omt
h.xps_taeyfxd#o rudrbn
at_uhsrtg=ie
r on_oi
MySQL to Neo4j: A DBA Perspective - David Stern @ GraphConnect NY 2013

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Use
File System
$AHT_E4 =/p/e4
PT_ONOJ
otnoj
/p/e4/i
otnojbn
noj
e4
nojbcu
e4-akp
/p/e4/of
otnojcn
nojpoete
e4.rpris
nojsre.rpris
e4-evrpoete
nojwaprcn
e4-rpe.of
/p/e4/aa
otnojdt
/p/e4/aagahd
otnojdt/rp.b
Teata gahdt
h cul rp aa
/p/e4/aalg
otnojdt/o
Allg
l os
Use
File System
$AHT_E4 =/p/e4
PT_ONOJ
otnoj
/p/e4/i (urbnmsl
otnojbn /s/i/yq)
noj
e4
nojbcu
e4-akp
/p/e4/of (ecmsl
otnojcn
/t/yq)
nojpoete
e4.rpris
nojsre.rpris
e4-evrpoete
nojwaprcn
e4-rpe.of
/p/e4/aa(vrlbmsl
otnojdt /a/i/yq)
/p/e4/aagahd (vrlbmsldt)
otnojdt/rp.b /a/i/yq/aa
Teata gahdt
h cul rp aa
/p/e4/aalg(vrlgmsl
otnojdt/o /a/o/yq)
Allg
l os
Use
Indexes
The database itself is a natural index
Lucene for searches

neo4j 2.0:
Nodes have labels: Person, Location, etc. that group them into sets
CET IDXO :esnnm)
RAE NE N Pro(ae

Look familiar?
CET IDXi_ne O Pro (d;
RAE NE didx N esn i)
Use
Indexes
neo4j 2.0:
Properties can have unique constraints
CET CNTAN O (okBo)ASR bo.snI UIU
RAE OSRIT N bo:ok SET okib S NQE

Look familiar?
CET UIU IDXealidxO Pro (mi)
RAE NQE NE mi_ne N esn eal;

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graph database
Use
Indexes
Current 1.9.x:
Auto indexing (deprecated):
one for nodes, one for relationships
off by default
Use
Querying
msl slc *fo gahlcllmt1;
yq> eet
rm rp_oa ii 0
+-------------------------------+
--+---------+----+-------+-----|i |gahtmlt_d|hs_d|sm_ur_d|sm_ne |
d
rp_epaei
oti
npqeyi
npidx
+-------------------------------+
--+---------+----+-------+-----| 1|
1 |
2
1|
0|
|
| 2|
9|
1|
0|
|
| 3|
1 |
0
1|
0|
|
| 4|
8|
1|
0|
|
| 5|
5 |
8
2|
0|
|
| 6|
6 |
2
2|
0|
|
| 7|
5 |
3
2|
0|
|
| 8|
3 |
7
2|
0|
|
| 9|
6 |
7
2|
0|
|
|1 |
0
6 |
5
2|
0|
|
+-------------------------------+
--+---------+----+-------+-----1 rw i st(.0sc
0 os n e 00 e)
http://www.mysql.com/products/workbench/
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Cookies program to display the information though cookie creation
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Use
Querying via REST
PS ht:/oahs:44d/aacpe
OT tp/lclot77/bdt/yhr
Acp:apiainjo;castUF8
cet plcto/sn hre=TCnetTp:apiainjo
otn-ye plcto/sn
{

}

"ur":"tr x =nd:oeat_ne(ae{trNm}
qey
sat
oend_uoidxnm=satae)
mthpt =(-r-red
ac ah
x[]fin)
weefin.ae={ae rtr TP(),
hr rednm
nm} eun YEr"
"aas :{
prm"
"trNm":""
satae
I,
"ae :"o"
nm"
yu
}

Example response:
20 O
0: K
CnetTp:apiainjo;castUF8
otn-ye plcto/sn hre=T{
}

"oun":["YEr"]
clms
TP() ,
"aa :[["nw ]]
dt"
ko"
DBA Perspective
Use the best database for the job, or both
neo4j ships with great tools
neo4j is easier to configure: fewer options, less complex, still flexible
for optimization
HA more robust and more opaque than basic replication
For better or worse, JVM handles a lot for you
Authorization - it's up to you
Scaling up is easier than changing your data model
We're hiring
jobs@fiftythree.com
Thank You!
Thanks to:

Aseem Kishore @aseemk
Chris Leishman @cleishm
Max De Marzi @maxdemarzi

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