The original problem comes from corollary (10.10.6), chapter 10, Volumn I, EGA.
I state it in the language of modules here for convenience.
Claim. If an $R$-module $F$ is a limit of two inverse(or projective) systems $\{F_n\}_{n \geq 1}$ and $\{G_n\}_{n \geq 1}$, where the morphisms $\phi_{m,n} : F_n \longrightarrow F_m, \psi_{m,n} : G_n \longrightarrow G_m, m \leq n$ satisfy $\phi_{m,n}(F_n) = F_m$ and $\psi_{m,n}(G_n) = G_m$, then the two inverse systems are isomorphic.
I believe that this claim is wrong. Are there any examples?
Edit: EGA I corollary(1, 10.10.6) is correct due to (0,7.2.9).