As I wrote in my comment in the linked question, suppose that $b, c$ are nonnegative integers. Set
$$J(a, m) := \int_0^\infty e^{-a x} (1 - e^{-x})^m \,dx.$$ Substituting $u := e^{-x}$ gives
$$J(a, m) = \int_0^1 u^{a - 1} (1 - u)^m \,du = \frac{\Gamma(a) \Gamma(1 + m)}{\Gamma(a + m + 1)} .$$ Differentiating gives
$$\int_0^\infty e^{-ax} x^b (1 - e^{-x})^m \log^c(1 - e^{-x}) \,dx = (-1)^b \frac{\partial^b}{\partial a^b} \frac{\partial^c}{\partial m^c} \left(\frac{\Gamma(a) \Gamma(1 + m)}{\Gamma(a + m + 1)}\right) .$$ Evaluating at $m = 0$ gives that the integral in the question statement is
\begin{multline*}
I(a, b, c)
= \int_0^\infty e^{-ax} x^b \log^c(1 - e^{-x}) \,dx \\
= (-1)^b \left.\frac{\partial^b}{\partial a^b} \frac{\partial^c}{\partial m^c}\right\vert_{m = 0} \left(\frac{\Gamma(a) \Gamma(1 + m)}{\Gamma(a + m + 1)}\right) .
\end{multline*}
For any particular $c$ we can evaluate the derivative explicitly in terms of the polygamma functions, $\psi^{(n)}(x) = \frac{d^n}{dx^n} \log \Gamma(x)$. As usual $\psi := \psi^{(0)}$ denotes the digamma function.
For $c = 0$,
$$I(a, b, 0) = \frac{b!}{a^{1 + b}} .$$
For $c = 1$, we recover the formula from the linked question,
\begin{multline}
I(a, b, 1)
= \int_0^\infty x^b e^{-a x} \log(1 - e^{-x}) \,dx \\
= \frac{b!}{a^{b + 1}} \left(-\gamma - \sum_{k = 0}^b \frac{(-1)^k}{k!} a^k \psi^{(k)}(1 + a)\right).
\end{multline}
For $c = 2$,
\begin{multline}
I(a, b, 2)
= \int_0^\infty x^b e^{-a x} \log^2(1 - e^{-x}) \,dx \\
= \Gamma(1 + b) \sum_{k = 0}^b \frac{2 \gamma \psi^{(k)}(1 + a) + \frac{d^k}{da^k}(\psi^2(1 + a)) - \psi^{(1 + k)}(1 + a)}{(-a)^{1 + b - k} \Gamma(1 + k)}
\end{multline}
The term $\frac{d^k}{da^k}(\psi^2(1 + a))$ can be expanded as
$$
\frac{d^k}{da^k}(\psi^2(1 + a)) = \sum_{l = 0}^k {k \choose l} \psi^{(l)}(1 + a) \psi^{(k - l)}(1 + a) .
$$