I used to analyse my compounds on LC-MSdevice with 95% water/5% acn +0,1 formic acid. My column is hypersilgold (C18). When I did my acquisition, I obtain this chromatogram sometimes, and it doesn't depend of my sample, because when I inject again the same sample, it's OK.
Generally, when this problem happens, it disappears after 5-10 injection in a row.