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I'm trying to clone a private GitHub repo that I'm the owner of using Atom text editor. Using the GitHub:Clone command, I enter a URL like: https://github.com/orgname/reponame , and I receive an error as such:

Unable to clone https://github.com/orgname/reponame Cloning into 'some directory'... remote: Repository not found. fatal: repository 'https://github.com/orgname/reponame/' not found

How can I clone this repo in Atom?

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Try using the clone command with SSH key. It is not only a problem with Github. Also a selfhosted Git server cause porblems with private repositories. See the Link below for help with the SSH key on Github: https://help.github.com/articles/connecting-to-github-with-ssh/

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