All Questions
9
questions
81
votes
4
answers
29k
views
How should tiny $p$-values be reported? (and why does R put a minimum on 2.22e-16?)
For some tests in R, there is a lower limit on the p-value calculations of $2.22 \cdot 10^{-16}$. I'm not sure why it's this number, if there is a good reason for ...
- 1,422
25
votes
3
answers
29k
views
How to present box plot with an extreme outlier?
I could use some guidance about presenting some data.
This first plot is a case-control comparison for the cytokine IL-10. I've manually set the y axis to include 99% of the data.
The reason I set ...
- 251
41
votes
3
answers
34k
views
How to present results of a Lasso using glmnet?
I would like to find predictors for a continuous dependent variable out of a set of 30 independent variables. I am using Lasso regression as implemented in the glmnet package in R. Here is some dummy ...
- 2,773
4
votes
3
answers
15k
views
How to report negative binomial regression results from R
I have fit a negative binomial model in R, and would like to report the findings, but I'm unsure how (or if) I should convert the estimates to reportable coefficients. Here is my output:
...
- 305
1
vote
0
answers
1k
views
Reporting binomial logistic regression
I want to report the results of a binomial logistic regression where I want to assess difference between the 3 levels of a factor (called System) on the dependent variable (called Response) taking two ...
- 1,713
2
votes
0
answers
4k
views
How to report the results of an anova() model comparison?
I have two models with the same outcome variable and the same independent variables, but Model 1 has two more independent variables than ...
- 123
2
votes
1
answer
79
views
How do we report a regression with categorical * continouns interaction?
I was wondering how would be the best way to report this model ?
...
- 781
1
vote
0
answers
3k
views
How to report a permutation test?
I want to compare a parameter between two independent groups of volunteers (see MWE below). All volunteers had baseline reading (V1) and a subsequent reading by a later visit (V2) for intervention (<...
- 1,125
0
votes
1
answer
326
views
Reporting guideline for bayesian using pd and ROPE
In the bayestestR articles, I came across the reporting guidelines that they recommend
“the effect of X has a probability of pd of being negative (Median = median, ...
- 227