Can a prophet issue commands that go beyond the Torah?
The Torah says only to blot out Amalek's memory:
The Lord said to Moses, "... I will utterly blot out the memory of Amalek from under heaven." [Ex. 17:14, Deut. 25:19]
But later Samuel tells King Saul to wipe out the Amalekites physically:
And Samuel said to Saul ... “Thus said the Lord of Hosts: ... Go and attack Amalek, and utterly destroy all that they have, and do not spare them. Slay man and woman, infant and suckling, ox and sheep, camel and ass.” [1Sam 15:1-33]
Isn't that going beyond the Torah? Some commentators have said as much:
-Rabbi Samson Raphael Hirsch: the command was to destroy “the remembrance of Amalek”, not kill Amalekites. [Hirsch on Deut. 25]
-The Sfat Emet: the command was to hate Amalek, not perform any action. [Shemot Zachor 346]
-The Chafetz Chayyim: God will eliminate Amalek. Jews are only commanded to remember what Amalek did to them.
-Rabbi Simcha Bunim: the Torah says “blot out the memory of Amalek” (כִּֽי־מָחֹ֤ה אֶמְחֶה֙ אֶת־זֵ֣כֶר עֲמָלֵ֔ק מִתַּ֖חַת הַשָּׁמָֽיִם׃) in the singular, not the plural. Not the Amalekites, but Amalek.
I know the Talmud says we must not try to kill Amalekites today because we lost the ability to recognize them:
But Sennacherib, King of Assyria, had come up already and confused all the lands as it is said in Isaiah, “I have removed the bounds of the peoples,” [Isaiah 10:13] So the rabbis decreed that the seven nations of Canaan no longer exist because the Assyrians [and not the Israelites] wiped them out. [Yoma 54a]
On this basis, 19th-century Turkish rabbi Hayyim Palaggi said that we lost the tradition of how to recognize Amalekites, so we cannot fulfill the commandment to wipe them out. [Enei Kol Hai 73, on Sanhedrin 96b]
But my question stands: How can a prophet issue commands that go beyond the Torah? Deut. 13:1 says: Do not add to or subtract from the Torah.