MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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nnUNet nnUNet Public

Python 5.5k 1.7k
batchgenerators batchgenerators Public

A framework for data augmentation for 2D and 3D image classification and segmentation

Jupyter Notebook 1.1k 219
trixi trixi Public

Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

Python 219 19
TractSeg TractSeg Public

Automatic White Matter Bundle Segmentation

Python 221 73
basic_unet_example basic_unet_example Public

An example project of how to use a U-Net for segmentation on medical images with PyTorch.

Python 137 38
nnDetection nnDetection Public

nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

Python 534 90

Repositories

dynamic-network-architectures Public

MIC-DKFZ/dynamic-network-architectures’s past year of commit activity

Python 60 Apache-2.0 23 3 1 Updated Jul 31, 2024
Longitudinal-Difference-Weighting Public
Longitudinal Segmentation of MS Lesions via Temporal Difference Weighting

MIC-DKFZ/Longitudinal-Difference-Weighting’s past year of commit activity

0 Apache-2.0 0 0 0 Updated Jul 31, 2024
nnUNet Public

MIC-DKFZ/nnUNet’s past year of commit activity

Python 5,457 Apache-2.0 1,671 180 (1 issue needs help) 12 Updated Jul 31, 2024
batchgeneratorsv2 Public

MIC-DKFZ/batchgeneratorsv2’s past year of commit activity

Python 13 Apache-2.0 4 0 1 Updated Jul 29, 2024
mood Public
Repository for the Medical Out-of-Distribution Analysis Challenge.

MIC-DKFZ/mood’s past year of commit activity

Python 59 Apache-2.0 6 2 3 Updated Jul 25, 2024
basic_unet_example Public
An example project of how to use a U-Net for segmentation on medical images with PyTorch.

MIC-DKFZ/basic_unet_example’s past year of commit activity

Python 137 Apache-2.0 38 5 1 Updated Jul 25, 2024
batchgenerators Public
A framework for data augmentation for 2D and 3D image classification and segmentation

MIC-DKFZ/batchgenerators’s past year of commit activity

Jupyter Notebook 1,071 Apache-2.0 219 34 9 Updated Jul 12, 2024
napari-blosc2 Public

MIC-DKFZ/napari-blosc2’s past year of commit activity

Python 1 Apache-2.0 0 0 0 Updated Jul 11, 2024
nnDetection Public
nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

MIC-DKFZ/nnDetection’s past year of commit activity

Python 534 Apache-2.0 90 30 1 Updated Jul 11, 2024
Skeleton-Recall Public
Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures

MIC-DKFZ/Skeleton-Recall’s past year of commit activity

Python 28 Apache-2.0 1 2 0 Updated Jul 10, 2024