Jump to content

Nitrospirota

From Wikipedia, the free encyclopedia

Nitrospirota
Scientific classification Edit this classification
Domain: Bacteria
Phylum: Nitrospirota
Garrity & Holt 2021[1]
Classes & Orders
Synonyms
  • "Nitrospirae" Garrity and Holt 2001
  • "Nitrospiraeota" Oren et al. 2015
  • "Nitrospirota" Whitman et al. 2018

Nitrospirota is a phylum of bacteria. It includes multiple genera, such as Nitrospira, the largest. The first member of this phylum, Nitrospira marina, was discovered in 1985.[2] The second member, Nitrospira moscoviensis, was discovered in 1995.[3][4]

Nitrospirota contains nitrifying taxa which oxidize nitrite to nitrate (nitrite-oxidizing bacteria, NOB[5]) and commamox bacteria Nitrospira inopinata discovered in 2015[6][7] and cultivated in 2017.[8]

Phylogeny

[edit]
16S rRNA based LTP_08_2023[9][10][11] 120 single copy marker proteins based GTDB 08-RS214[12][13][14]
Nitrospirota
"Leptospirillia"
"Leptospirillales"
Thermodesulfovibrionia
Thermodesulfovibrionales
"Leptospirillaeota"
"Leptospirillales"
"Leptospirillaceae"
"Leptospirillia"
Nitrospirota
"Thermodesulfovibrionia"
"Magnetobacteriaceae"
"Sulfobiaceae"

"Ca. Sulfobium mesophilum"

"Thermodesulfovibrionales"
"Nitrospiria"

Taxonomy

[edit]

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LSPN)[15] and the National Center for Biotechnology Information (NCBI).[4]

See also

[edit]

References

[edit]
  1. ^ Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi:10.1099/ijsem.0.005056. PMID 34694987.
  2. ^ Watson SW, Bock E, Valois FW, Waterbury JB, Schlosser U (1986). "Nitrospira marina gen. nov. sp. nov.: a chemolithotrophic nitrite-oxidizing bacterium". Arch Microbiol. 144 (1): 1–7. doi:10.1007/BF00454947. S2CID 29796511.
  3. ^ Ehrich S, Behrens D, Lebedeva E, Ludwig W, Bock E (July 1995). "A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and its phylogenetic relationship". Archives of Microbiology. 164 (1): 16–23. doi:10.1007/BF02568729. PMID 7646315. S2CID 2702110.
  4. ^ a b Sayers. "Nitrospirae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2016-03-20.
  5. ^ Daims H, Nielsen JL, Nielsen PH, Schleifer KH, Wagner M (November 2001). "In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants". Applied and Environmental Microbiology. 67 (11): 5273–84. Bibcode:2001ApEnM..67.5273D. doi:10.1128/AEM.67.11.5273-5284.2001. PMC 93301. PMID 11679356.
  6. ^ Daims H, Lebedeva EV, Pjevac P, Han P, Herbold C, Albertsen M, et al. (December 2015). "Complete nitrification by Nitrospira bacteria". Nature. 528 (7583): 504–9. Bibcode:2015Natur.528..504D. doi:10.1038/nature16461. PMC 5152751. PMID 26610024.
  7. ^ van Kessel MA, Speth DR, Albertsen M, Nielsen PH, Op den Camp HJ, Kartal B, et al. (December 2015). "Complete nitrification by a single microorganism". Nature. 528 (7583): 555–9. Bibcode:2015Natur.528..555V. doi:10.1038/nature16459. PMC 4878690. PMID 26610025.
  8. ^ Kits KD, Sedlacek CJ, Lebedeva EV, Han P, Bulaev A, Pjevac P, et al. (September 2017). "Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle". Nature. 549 (7671): 269–272. Bibcode:2017Natur.549..269K. doi:10.1038/nature23679. PMC 5600814. PMID 28847001.
  9. ^ "The LTP". Retrieved 20 November 2023.
  10. ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
  11. ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  12. ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
  13. ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
  14. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
  15. ^ Euzéby JP. ""Nitrospirae"". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2016-03-20.

Further reading

[edit]
[edit]