All Questions
Tagged with performance numpy
239
questions
4
votes
2
answers
108
views
Srivastava multivariate Fox H function in MATLAB
I was trying to rewrite the Python code in MATLAB.
The result is consistent.
But, the MATLAB code is so slow. Any help would be appreciated.
Ref python code link
The MATLAB code written by me is as ...
- 169
3
votes
5
answers
1k
views
How do I speed up this simulation program
This is a program to solve a differential equation numerically using Euler method. As of now, it is very slow, and I need to run 10000 Monte Carlo simulations.
The differential equation is called ...
- 161
4
votes
2
answers
166
views
NumPy script to convert BGR to HSL and back
This is a NumPy script that converts BGR arrays to HSL arrays and back, without using OpenCV. Input and output values are arrays of 3 dimensions with values ranging from 0 to 1, the shape of the ...
- 3,178
5
votes
1
answer
82
views
Generating Abelian sandpile "zeros" in python
Here is some code that generates the zero element of an Abelian sandpile model (ASM), for any given model dimensions, and then plots the result as a colormesh. Here is a wiki page explaining the ASM. ...
- 51
0
votes
1
answer
207
views
Find the first value bigger than a threshold
This function takes two inputs: A is 2D (N,5) while B is 1D (N).
It tries to find the smallest ...
- 13
2
votes
1
answer
179
views
Is this the right implementation for Linear Programming (puLP) on python?
I have created a LP function to help maximize a set of features. My first time playing with this library and also conducting LP.
Variables:
Number of features => X
Number of Categories => Y
...
- 23
6
votes
1
answer
135
views
basic Hartee-Fock program to compute the total energies and some properties of a molecule
I am trying to write a basic Hartee-Fock program that computes the total energies and some properties of a molecule given as an input. The code uses Cython to statically compile the computationally ...
- 163
6
votes
2
answers
482
views
Means square displacement (MSD)
I have written a code to calculate the MSD of some molecules. The code averages over multiple time origins (sliding time window) and over all the molecules. I have also made it do one extra thing: do ...
- 61
8
votes
2
answers
525
views
Fourier Series of a given function
This is a very simple code that expresses a function in terms of Trigonometric Fourier Series and generates a animation based on the harmonics. I would like to know some ways to improve the ...
- 83
3
votes
1
answer
161
views
Solve an option pricing PDE in Python - Part 1 [closed]
The Github repository NM-Heston solves call option prices under the Heston 2-factor model using ADI splitting schemes. I am adapting the code to price options under the 3-factor Heston-Hull-White ...
- 101
3
votes
0
answers
103
views
E-car-sharing problem with charging between the bookings
I am writing code that, at some later point, will be part of an academic multi-agent simulation of the learning process of car-sharing users and grid stability. This code deals with finding the price ...
- 223
1
vote
1
answer
136
views
Further optimizing the ISING model
I've implemented the 2D ISING model in Python, using NumPy and Numba's JIT:
...
3
votes
1
answer
118
views
Create a forecast matrix from time series samples
I would like to create a matrix of delay from a time series.
For example, given
y = [y_0, y_1, y_2, ..., y_N] and W = 5
I need to create this matrix:
...
- 133
1
vote
1
answer
499
views
Create normals from triangulated surface
Objective
I have a 3D face mesh triangulated. I have computed the midpoint of each triangle in the mesh, and I have the normal vector (n1, n2,n3) for each triangle. The objective is to create a 2D ...
- 111
3
votes
2
answers
195
views
Intercolumn statistics between columns in a dataframe
I have a df and need to count how many adjacent columns have the same sign as other columns based on the sign of the first column, and multiply by the sign of the ...
- 177
0
votes
0
answers
140
views
Algorithm to generate splats from point clouds
I am trying to write a program to generate splats from point clouds from following this paper and this paper.
The function I have to generate 1 splat is here:
...
- 61
4
votes
1
answer
75
views
Optimising compatibility-conflict graph solution - python recursive routine
Background
I'm implementing an algorithm which localises overlapping sound sources using the time-difference-of-arrivals across 3 sensors [1]. Compatible 'triples' (e.g. with only 2 common sensors) ...
- 143
2
votes
1
answer
412
views
Improving the speed of one-hot encoding a list of strings
I've recently developed two functions to functions to essentially convert a list of strings that look something like this (these strings are 101 characters long in my case):
...
- 123
2
votes
1
answer
235
views
Integration loop over multiple doping and temperature levels
I want to perform some calculations on a large dataset. The code can be found below, where I want to calculate the values for 'results_nr' over a large loop (1000 x 910) values. Can you help me out ...
- 21
1
vote
1
answer
75
views
Generate new column based on two columns of dataframe
I need to generate column a_b based on column a and column b of ...
- 177
2
votes
1
answer
255
views
Replace nested for loops when assigning intial conditions in a 4-dimensional array
I create a 4-dimensional (x, y, z, t) array of zero values. I then set the initial values at t = Tmax. To do this, I use a nested for loop. I attempted to improve ...
- 101
3
votes
1
answer
206
views
Numerical integration in Python involving four dimensions
I'm trying to obtain the following S2 from a given S1,
$$
S2(i, j) =
\sum _{k=0} ^i
\sum _{l=0} ^j
S1(k, i-k, j, l)
e^{
-\sqrt{...
- 83
5
votes
1
answer
929
views
Laser physics simulation
This is for a computation for laser physics. The speed is quite slow, which seems to be delayed a lot by the three nested for loops with indices j,k, and l (with comments below). And the computation ...
- 83
1
vote
1
answer
700
views
Exponentially-weighted moving mean and standard deviation of an irregularly-spaced weighted time series
The following numpy/python function computes exponentially-weighted moving mean and standard deviation of an irregularly-spaced weighted time series. I want to make it faster by getting rid of the ...
- 123
1
vote
0
answers
128
views
Solving a linear system with Gaussian Elimination
I decided to implement a solver for linear systems of equations based on the gaussian elimination and reduction to upper triangular form. The gaussian elimination is quite simple to implement but the ...
- 27.5k
4
votes
3
answers
411
views
Pairwise Euclidean distance search algorithm
x and y are two-dimensional arrays with dimensions (AxN) and (BxN), i.e. they have the same number of columns.
I need to get a matrix of Euclidean distances between each pair of rows from x and y.
I ...
2
votes
1
answer
208
views
Generating a matrix with each row having normalized weights
I just asked this question over Stack Over Flow on how to improve my code and reposting it here as someone on Stack Overflow recommended this platform.
I have written two python functions and they are ...
- 21
3
votes
0
answers
66
views
Implementation of a crypto formula in Python
I need to implement in Python the formula in the image. The set B is a set of real numbers \$-1 \le t \le 1\$. Also, \$\mathbb{F}_2\$ is a set with the elements 0 and 1. \$y_i\$ is the \$i\$-th ...
- 139
2
votes
0
answers
139
views
Convolution layer using numpy in python
I'm trying to make a CNN in python using numpy. I have a finished product but it seems that it can be improved. On testing the convolutional layer is the biggest bottleneck
...
- 21
1
vote
0
answers
157
views
Computing the angle between two vectors (vectorized) for small angles and with few copies
I am implementing a function that computes the angle between two vectors when given two n-dimensional arrays and an axis along which to operate. I want to do this with as few copies as possible, and ...
- 1,051