All Questions
4
questions
0
votes
0
answers
108
views
Help sought with GWAS and vcf files, lack phenotype labels
This question has also been asked on Biostars
Hi, I am very new to this area, and I am taking a class about bioinformatics. For an independent project assignment, I need to do a GWAS. I am using the ...
1
vote
1
answer
1k
views
Making PLINK compatible files from VCF file without phenotype information
I have a big VCF file that I need to convert to, preferably, bed/bim/fam files that are readable by plink. Currently using plink 2. I am aware that this version of plink can be used to convert VCFs ...
- 11
1
vote
1
answer
2k
views
Convert VCF to genotype table
How can I convert a VCF file into a genotype table (SNP matrix)?
I have this format:
...
- 147
2
votes
1
answer
673
views
how do I convert a vcf file for a GWAS study (using R package vcfR)
I have a vcf file with individual level genetic data, that I read using the R package vcfR
...
- 121