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So i wanted to play around in gentoo to level up my linux knowledge.

I've installed it on virtualbox, but i didn't add a few USE flags, and during core compilation i didn't select a few necessary features to run X server on virtualbox. Described in here: https://wiki.gentoo.org/wiki/VirtualBox

Is my only solution now to re-install gentoo, or is there a way to recompile the kernel with the right USE flags etc

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You can always recompile the kernel. You should follow a guide tailored for your distro.

This link to gentoo wiki should suffice: http://wiki.gentoo.org/wiki/Kernel/Upgrade

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