I don't think there is a way to do that. You will have to convert the video yourself with the filter activated, and upload that.
See https://support.google.com/youtube/answer/1722171?hl=en under "Frame Rate":
Interlaced content should be deinterlaced before uploading. For
example, 1080i60 content should be deinterlaced to 1080p30, going from
60 interlaced fields per second to 30 progressive frames per second.
Handbrake is a free, open-source video encoder which can do this. Just select "Yadif" in the "Deinterlace" box, found on the "Filter" tab.
https://handbrake.fr/
Alternatively, you can probably use VLC itself to re-encode the video with the filter on. I have never tried it but I imagine it can be done.