I accidentally made a rsync copy of my root directory, "/" using the -a option, as follows:
user@mycomputer:~$ rsync -a / /backup-dir
user@mycomputer:~$ ls -l /backup-dir/
total 10102784
drwxrwxrwx 1 user nogroup 0 Feb 3 18:18 bin
drwxrwxrwx 1 user nogroup 0 Feb 3 18:21 dev
I am unable to delete /backup-dir/bin and /backup-dir/dev or any of the individual files within due to what I suspect to a problem with being unable to remove symlinks within those directories. (/backup-dir/bin shown below, same for /backup-dir/dev).
user@mycomputer:~$ sudo rm -rf /backup-dir/bin
rm: cannot remove ‘/backup-dir/bin’: Directory not empty
user@mycomputer:~$ ls -l /backup-dir/bin
total 16384
lr-xr-xr-x 1 user root 22 Feb 3 16:11 bzcmp -> bzdiff
lr-xr-xr-x 1 user root 22 Feb 3 16:11 bzegrep -> bzgrep
lr-xr-xr-x 1 user root 22 Feb 3 16:11 bzfgrep -> bzgrep
lr-xr-xr-x 1 user root 22 Feb 3 16:11 bzless -> bzmore
lr-xr-xr-x 1 user root 26 Feb 3 16:11 dnsdomainname -> hostname
lr-xr-xr-x 1 user root 26 Feb 3 16:11 domainname -> hostname
lr-xr-xr-x 1 user root 26 Feb 3 16:11 lessfile -> lesspipe
lr-xr-xr-x 1 user root 18 Feb 3 16:11 lsmod -> kmod
lr-xr-xr-x 1 user root 26 Feb 3 16:11 nisdomainname -> hostname
lr-xr-xr-x 1 user root 22 Feb 3 16:11 open -> openvt
lr-xr-xr-x 1 user root 18 Feb 3 16:11 rbash -> bash
lr-xr-xr-x 1 user root 18 Feb 3 16:11 rnano -> nano
lr-xr-xr-x 1 user root 18 Feb 3 16:11 sh -> dash
lr-xr-xr-x 1 user root 18 Feb 3 16:11 sh.distrib -> dash
lr-xr-xr-x 1 user root 24 Feb 3 16:11 static-sh -> busybox
lr-xr-xr-x 1 user root 26 Feb 3 16:11 ypdomainname -> hostname
user@mycomputer:~$ sudo rm /backup-dir/bin/bzcmp
user@mycomputer:~$ ls -l /backup-dir/bin
total 16384
lr-xr-xr-x 1 user root 22 Feb 3 16:11 bzcmp -> bzdiff
lr-xr-xr-x 1 user root 22 Feb 3 16:11 bzegrep -> bzgrep
lr-xr-xr-x 1 user root 22 Feb 3 16:11 bzfgrep -> bzgrep
lr-xr-xr-x 1 user root 22 Feb 3 16:11 bzless -> bzmore
lr-xr-xr-x 1 user root 26 Feb 3 16:11 dnsdomainname -> hostname
lr-xr-xr-x 1 user root 26 Feb 3 16:11 domainname -> hostname
lr-xr-xr-x 1 user root 26 Feb 3 16:11 lessfile -> lesspipe
lr-xr-xr-x 1 user root 18 Feb 3 16:11 lsmod -> kmod
lr-xr-xr-x 1 user root 26 Feb 3 16:11 nisdomainname -> hostname
lr-xr-xr-x 1 user root 22 Feb 3 16:11 open -> openvt
lr-xr-xr-x 1 user root 18 Feb 3 16:11 rbash -> bash
lr-xr-xr-x 1 user root 18 Feb 3 16:11 rnano -> nano
lr-xr-xr-x 1 user root 18 Feb 3 16:11 sh -> dash
lr-xr-xr-x 1 user root 18 Feb 3 16:11 sh.distrib -> dash
lr-xr-xr-x 1 user root 24 Feb 3 16:11 static-sh -> busybox
lr-xr-xr-x 1 user root 26 Feb 3 16:11 ypdomainname -> hostname
I was also unable to chmod permissions within /backup-dir/bin, in case that matters.
UPDATE: This leads me in the right direction: https://unix.stackexchange.com/a/33594
user@mycomputer:~$ sudo strace rm -f /backup-dir/bin/bzcmp
... (long message, which includes the following)...
unlinkat(AT_FDCWD, "bin/bzcmp", 0) = 0
The attempts to unlink
the files are unsuccessful. The link above suggests deleting by inode. However, I want to preserve the inodes for the original files located in /bin. I only want to remove the symbolic links in order to remove /backup-dir/bin/ and /backup-dir/dev/.
Suggestions for how to remove /backup-dir/bin and /backup-dir/dev are appreciated.
mkdir empty; rsync -a --delete empty/. /backup-dir/bin/.
and execute as the same user as the one that created it.