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git config core.whitespace cr-at-eol.warning: LF will be replaced by CRLFinstead ofwarning: CRLF will be replaced by LF, and I'm in Linux. Any idea why? I want all to end with LF, not CRLF!git config --global core.autocrlf input, do the steps in this answer(rm, add, commit), and you will getwarning: CRLF will be replaced by LF. The file will have its original line endings in your working directory.. Remove the files (because they have the original, wrong CRLF) and checkout them again from the last "Fix CRLF" commit.