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What will be the effect of density on relaxation time?

I am doing a Monte Carlo simulation of protein chains of various lengths. I change the densities of the simulation box. In my experiment, I found that density has no effect on relaxation time. Do you ...
user366312's user avatar
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0 answers
173 views

Canonical partition function, simple model of 2D polymer

I am trying to simulate using monte-carlo method the behavior of a simple of polymer. The model - The polymer is made of N bars with length a , each bar can be placed in +a or -a relative to the end ...
Lior Fridman's user avatar
3 votes
1 answer
75 views

Exploring potential landscape with Monte Carlo

I am using a Monte Carlo approach for studying folding of a polymer chain. The polymer may fold in many configurations, corresponding to local potential minima, studying which is what interests me (i....
Roger V.'s user avatar
  • 60.3k
2 votes
1 answer
167 views

Linking elastic moduli to shape fluctuations

I am simulating a polymer network shaped as a sphere. I would like to compute its elastic moduli (bulk and Young's, for example) not by their shear-strain definition but by looking at the fluctuations ...
lr1985's user avatar
  • 1,225
3 votes
0 answers
75 views

Unexpected behaviour in numerical simulation of polymer

I noticed some strange behaviour when simulating the behaviour of a polymer subjected to an external pulling force at both ends, and would like to better understand its origin. I used LAMMPS to ...
Drubbels's user avatar
  • 321
1 vote
1 answer
45 views

How can the presence of a solvent be included in a polymer bead-spring model?

I have a bead-spring model of a polymer melt and I would like to simulate what happens when a solvent is added to the system. The most direct way to do this would be to add solvent particles into the ...
user668074's user avatar