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What is called the diffraction phase in an interferometer?

I'm reading articles about atom interferometers using Bragg diffraction to split the atom beam. It says the beam splitter causes an unwanted phase shift between transmitted and reflected waves? So ...
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Literature on interferometry

I am looking for a good book/notes etc. about interferometry. I need detailed information about optical as well as atom interferometers with strong emphasis on quantum version for high precision ...