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0 votes
1 answer
77 views

Temperature of a Lennard-Jones system

Are the formulas used in getTemperature() and setTemperature() correct? ...
user366312's user avatar
1 vote
2 answers
162 views

Minimalistic implementation of Leapfrog integration algorithm (2)

Please review this C++ listing of an implementation of Leapfrog integration. This C++ listing is rewritten according to this review. ...
user366312's user avatar
6 votes
2 answers
870 views

Molecular simulation: Minimum Image Convention

Can you review the following code to check to see if the Minimum Image Convention is properly implemented? ...
user366312's user avatar
6 votes
2 answers
482 views

Means square displacement (MSD)

I have written a code to calculate the MSD of some molecules. The code averages over multiple time origins (sliding time window) and over all the molecules. I have also made it do one extra thing: do ...
mjksho's user avatar
  • 61
2 votes
1 answer
161 views

Simulation of a real capacitor to calculate its capacitance

The goal is to simulate a real flat plate capacitor in 2D. The potential of the armature is fixed to +V and -V, on the edges of the simulation cell the potential is zero. Between the plates of the ...
Pietro Scapolo's user avatar
11 votes
3 answers
516 views

Membrane protein diffusion in different confinement models

I am a junior Software Engineer, C++ is usually my main jam but I started picking up Python for a research project I am doing in college. I am eager to learn as much Python syntax, tricks, best ...
hexaquark's user avatar
  • 213
10 votes
1 answer
922 views

High performance physics simulation - core class design

Below is some stripped down code from a physics simulation. The classes Vector2, Line and ...
Oliver Schönrock's user avatar
3 votes
1 answer
503 views

Barnes-Hut \$n\$-body simulation (3D) in C++

I have implemented the Barnes-Hut algorithm for \$n\$-body-simulations (in this case "sort-of" 3D-gravity - see below). I'd appreciate any comments for improving my code (especially ...
Paul Aner's user avatar
  • 131
4 votes
1 answer
411 views

Path of a particle in a non-uniform B field

I have completed my project which simulates the path of a particle trapped in a device known as a magnetic mirror. I would like your thoughts and improvements on my implementation. Here is the code: <...
Dila's user avatar
  • 215
4 votes
2 answers
117 views

Simulate transmission spectrum of extreme ultraviolet laser pulse through laser-dressed finite sample (Python Version)

I am currently participating in research on transient absorption spectroscopy and four wave mixing. In the experimental design, an extreme ultraviolet (XUV) laser pulse and infrared (IR) laser pulse ...
Matt Bowman's user avatar
3 votes
0 answers
37 views

MatLab: Plotting Output Electric Field Spectrum

Goal This code combines two matrices, diagonalizes that matrix, and finds the right and left eigenvectors, right and left eigenvectors are normalized with respect to each other, then it is multiplied ...
Mate's user avatar
  • 31
1 vote
1 answer
47 views

Optimize narrow phase contact detection for phyiscs simulation code

I'm trying to optimize the narrow phase of the contact detection in my code. I'm using OpenMP for multithreading. That is the starting code: ...
David's user avatar
  • 111
3 votes
1 answer
216 views

Molecular dynamics simulation

I'm looking for some fresh ideas on how to optimize a couple of functions in my C++ code. I run the code through a profiler and it shows that they take 20% and 40% of the time respectively. The ...
ad1v7's user avatar
  • 133
3 votes
1 answer
1k views

N-Body Gravitational Simulation of Point-Masses in Python

I made an n-body gravitational simulation in python. The algorithm does produce an approximate solution, which is shown at the bottom of the post. Additional methods to produce animations (among other ...
user avatar
33 votes
9 answers
8k views

Simple n-body class in C++

As part of my training, I implemented a n-body class in C++ to simulate gravitational interaction of bodies and to get more familiar with features that C++ offers such as object oriented programming. ...
Gilfoyle's user avatar
  • 1,125

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