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    For a simpler case (.cs on the left, .pp on the right), you can also check Align filenames with different extensions in the Comparison tab of Session > Session Settings. Commented Nov 8, 2017 at 22:47
  • If you just need it once, you can right-click the left file, choose 'Compare to...' and then click the file to the right
    – PieBie
    Commented Jul 18, 2019 at 13:10