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  • @surfasb It was probably just reindexing that did it. The Start Menu folder is an Included Location with no exclusions by default.
    – 1j01
    Commented Dec 3, 2016 at 21:30
  • On Windows Server 2016, AppData is excluded by default for all users. When I remove the exlusion, Start Menu under AppData is indexed, but even after forcing a rebuild, most shortcuts are missing.
    – SebiF
    Commented Jan 11, 2017 at 16:47